RXLR effector reservoir in two Phytophthora species is dominated by a single rapidly evolving superfamily with more than 700 members
Identifieur interne : 000F30 ( Main/Exploration ); précédent : 000F29; suivant : 000F31RXLR effector reservoir in two Phytophthora species is dominated by a single rapidly evolving superfamily with more than 700 members
Auteurs : Rays H. Y. Jiang [États-Unis, Pays-Bas] ; Sucheta Tripathy [États-Unis] ; Francine Govers [Pays-Bas] ; Brett M. Tyler [États-Unis]Source :
- Proceedings of the National Academy of Sciences of the United States of America [ 0027-8424 ] ; 2008.
Abstract
Pathogens secrete effector molecules that facilitate the infection of their hosts. A number of effectors identified in plant pathogenic
Url:
DOI: 10.1073/pnas.0709303105
PubMed: 18344324
PubMed Central: 2290801
Affiliations:
Links toward previous steps (curation, corpus...)
- to stream Pmc, to step Corpus: 000511
- to stream Pmc, to step Curation: 000511
- to stream Pmc, to step Checkpoint: 000B22
- to stream Ncbi, to step Merge: 000122
- to stream Ncbi, to step Curation: 000122
- to stream Ncbi, to step Checkpoint: 000122
- to stream Main, to step Merge: 000F49
- to stream Main, to step Curation: 000F30
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">RXLR effector reservoir in two <italic>Phytophthora</italic>
species is dominated by a single rapidly evolving superfamily with more than 700 members</title>
<author><name sortKey="Jiang, Rays H Y" sort="Jiang, Rays H Y" uniqKey="Jiang R" first="Rays H. Y." last="Jiang">Rays H. Y. Jiang</name>
<affiliation wicri:level="2"><nlm:aff id="aff1">*Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061; and</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Virginie</region>
</placeName>
<wicri:cityArea>*Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University, Blacksburg</wicri:cityArea>
</affiliation>
<affiliation wicri:level="4"><nlm:aff id="aff2">Laboratory of Phytopathology, Wageningen University, and Centre for BioSystems Genomics, NL-6709 PD, Wageningen, The Netherlands</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>Laboratory of Phytopathology, Wageningen University, and Centre for BioSystems Genomics, NL-6709 PD, Wageningen</wicri:regionArea>
<orgName type="university">Université de Wageningue</orgName>
<placeName><settlement type="city">Wageningue</settlement>
<region nuts="2">Gueldre (province)</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Tripathy, Sucheta" sort="Tripathy, Sucheta" uniqKey="Tripathy S" first="Sucheta" last="Tripathy">Sucheta Tripathy</name>
<affiliation wicri:level="2"><nlm:aff id="aff1">*Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061; and</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Virginie</region>
</placeName>
<wicri:cityArea>*Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University, Blacksburg</wicri:cityArea>
</affiliation>
</author>
<author><name sortKey="Govers, Francine" sort="Govers, Francine" uniqKey="Govers F" first="Francine" last="Govers">Francine Govers</name>
<affiliation wicri:level="4"><nlm:aff id="aff2">Laboratory of Phytopathology, Wageningen University, and Centre for BioSystems Genomics, NL-6709 PD, Wageningen, The Netherlands</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>Laboratory of Phytopathology, Wageningen University, and Centre for BioSystems Genomics, NL-6709 PD, Wageningen</wicri:regionArea>
<orgName type="university">Université de Wageningue</orgName>
<placeName><settlement type="city">Wageningue</settlement>
<region nuts="2">Gueldre (province)</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Tyler, Brett M" sort="Tyler, Brett M" uniqKey="Tyler B" first="Brett M." last="Tyler">Brett M. Tyler</name>
<affiliation wicri:level="2"><nlm:aff id="aff1">*Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061; and</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Virginie</region>
</placeName>
<wicri:cityArea>*Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University, Blacksburg</wicri:cityArea>
</affiliation>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PMC</idno>
<idno type="pmid">18344324</idno>
<idno type="pmc">2290801</idno>
<idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2290801</idno>
<idno type="RBID">PMC:2290801</idno>
<idno type="doi">10.1073/pnas.0709303105</idno>
<date when="2008">2008</date>
<idno type="wicri:Area/Pmc/Corpus">000511</idno>
<idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">000511</idno>
<idno type="wicri:Area/Pmc/Curation">000511</idno>
<idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">000511</idno>
<idno type="wicri:Area/Pmc/Checkpoint">000B22</idno>
<idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Checkpoint">000B22</idno>
<idno type="wicri:Area/Ncbi/Merge">000122</idno>
<idno type="wicri:Area/Ncbi/Curation">000122</idno>
<idno type="wicri:Area/Ncbi/Checkpoint">000122</idno>
<idno type="wicri:doubleKey">0027-8424:2008:Jiang R:rxlr:effector:reservoir</idno>
<idno type="wicri:Area/Main/Merge">000F49</idno>
<idno type="wicri:Area/Main/Curation">000F30</idno>
<idno type="wicri:Area/Main/Exploration">000F30</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">RXLR effector reservoir in two <italic>Phytophthora</italic>
species is dominated by a single rapidly evolving superfamily with more than 700 members</title>
<author><name sortKey="Jiang, Rays H Y" sort="Jiang, Rays H Y" uniqKey="Jiang R" first="Rays H. Y." last="Jiang">Rays H. Y. Jiang</name>
<affiliation wicri:level="2"><nlm:aff id="aff1">*Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061; and</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Virginie</region>
</placeName>
<wicri:cityArea>*Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University, Blacksburg</wicri:cityArea>
</affiliation>
<affiliation wicri:level="4"><nlm:aff id="aff2">Laboratory of Phytopathology, Wageningen University, and Centre for BioSystems Genomics, NL-6709 PD, Wageningen, The Netherlands</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>Laboratory of Phytopathology, Wageningen University, and Centre for BioSystems Genomics, NL-6709 PD, Wageningen</wicri:regionArea>
<orgName type="university">Université de Wageningue</orgName>
<placeName><settlement type="city">Wageningue</settlement>
<region nuts="2">Gueldre (province)</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Tripathy, Sucheta" sort="Tripathy, Sucheta" uniqKey="Tripathy S" first="Sucheta" last="Tripathy">Sucheta Tripathy</name>
<affiliation wicri:level="2"><nlm:aff id="aff1">*Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061; and</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Virginie</region>
</placeName>
<wicri:cityArea>*Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University, Blacksburg</wicri:cityArea>
</affiliation>
</author>
<author><name sortKey="Govers, Francine" sort="Govers, Francine" uniqKey="Govers F" first="Francine" last="Govers">Francine Govers</name>
<affiliation wicri:level="4"><nlm:aff id="aff2">Laboratory of Phytopathology, Wageningen University, and Centre for BioSystems Genomics, NL-6709 PD, Wageningen, The Netherlands</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>Laboratory of Phytopathology, Wageningen University, and Centre for BioSystems Genomics, NL-6709 PD, Wageningen</wicri:regionArea>
<orgName type="university">Université de Wageningue</orgName>
<placeName><settlement type="city">Wageningue</settlement>
<region nuts="2">Gueldre (province)</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Tyler, Brett M" sort="Tyler, Brett M" uniqKey="Tyler B" first="Brett M." last="Tyler">Brett M. Tyler</name>
<affiliation wicri:level="2"><nlm:aff id="aff1">*Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061; and</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Virginie</region>
</placeName>
<wicri:cityArea>*Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University, Blacksburg</wicri:cityArea>
</affiliation>
</author>
</analytic>
<series><title level="j">Proceedings of the National Academy of Sciences of the United States of America</title>
<idno type="ISSN">0027-8424</idno>
<idno type="eISSN">1091-6490</idno>
<imprint><date when="2008">2008</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass></textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en"><p>Pathogens secrete effector molecules that facilitate the infection of their hosts. A number of effectors identified in plant pathogenic <italic>Phytophthora</italic>
species possess N-terminal motifs (RXLR-dEER) required for targeting these effectors into host cells. Here, we bioinformatically identify >370 candidate effector genes in each of the genomes of <italic>P. sojae</italic>
and <italic>P. ramorum</italic>
. A single superfamily, termed avirulence homolog (<italic>Avh</italic>
) genes, accounts for most of the effectors. The Avh proteins show extensive sequence divergence but are all related and likely evolved from a common ancestor by rapid duplication and divergence. More than half of the Avh proteins contain conserved C-terminal motifs (termed W, Y, and L) that are usually arranged as a module that can be repeated up to eight times. The <italic>Avh</italic>
genes belong to the most rapidly evolving part of the genome, and they are nearly always located at synteny breakpoints. The superfamily includes all experimentally identified oomycete effector and avirulence genes, and its rapid pace of evolution is consistent with a role for Avh proteins in interaction with plant hosts.</p>
</div>
</front>
</TEI>
<affiliations><list><country><li>Pays-Bas</li>
<li>États-Unis</li>
</country>
<region><li>Gueldre (province)</li>
<li>Virginie</li>
</region>
<settlement><li>Wageningue</li>
</settlement>
<orgName><li>Université de Wageningue</li>
</orgName>
</list>
<tree><country name="États-Unis"><region name="Virginie"><name sortKey="Jiang, Rays H Y" sort="Jiang, Rays H Y" uniqKey="Jiang R" first="Rays H. Y." last="Jiang">Rays H. Y. Jiang</name>
</region>
<name sortKey="Tripathy, Sucheta" sort="Tripathy, Sucheta" uniqKey="Tripathy S" first="Sucheta" last="Tripathy">Sucheta Tripathy</name>
<name sortKey="Tyler, Brett M" sort="Tyler, Brett M" uniqKey="Tyler B" first="Brett M." last="Tyler">Brett M. Tyler</name>
</country>
<country name="Pays-Bas"><region name="Gueldre (province)"><name sortKey="Jiang, Rays H Y" sort="Jiang, Rays H Y" uniqKey="Jiang R" first="Rays H. Y." last="Jiang">Rays H. Y. Jiang</name>
</region>
<name sortKey="Govers, Francine" sort="Govers, Francine" uniqKey="Govers F" first="Francine" last="Govers">Francine Govers</name>
</country>
</tree>
</affiliations>
</record>
Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Bois/explor/MelampsoraV2/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000F30 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000F30 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien |wiki= Bois |area= MelampsoraV2 |flux= Main |étape= Exploration |type= RBID |clé= PMC:2290801 |texte= RXLR effector reservoir in two Phytophthora species is dominated by a single rapidly evolving superfamily with more than 700 members }}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:18344324" \ | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \ | NlmPubMed2Wicri -a MelampsoraV2
This area was generated with Dilib version V0.6.38. |